At any given moment, the human genome spells out thousands of genetic words telling our cells which proteins to make. Each word is read by a molecule known as a tRNA.

New research suggests tRNA dynamics may play an important role in modulating the types of proteins in a cell. In work published this week in Cell researchers show how fluctuations in the amount of tRNAs can have a dramatic impact not only on the fate of a single cell, but also on diseases like metastatic breast cancer.

Some words in the English language can be spelled in more than one way--like "color" and "colour," which mean the same thing. The same is true for our genetic code.

When cells activate a gene to make protein, their genome spells out three-letter words known as codons. Each codon is specific for one building block of a protein. But in some cases, two or several codons signify the same building block. The codons are read by tRNAs, with one tRNA corresponding to each spelling.

All living things use the same language, but codon usage and tRNA availability varies among different organisms and different tissues--just as the spelling "colour" predominates among the British, while "color" is more common among Americans.

For decades, researchers have assumed that these tRNAs had little impact on the function of the cell. But these molecules have been difficult to study. Researchers devised and applied a new method that utilizes state-of-the-art genomic sequencing technology to measure the amount of tRNAs in different cell types.

The team chose to compare breast tissue from healthy individuals with tumor samples taken from breast cancer patients--including both primary tumors that had not spread from the breast to other body sites, and highly aggressive, metastatic tumors.

They found that the levels of two specific tRNAs were significantly higher in metastatic cells and metastatic tumors than in primary tumors that did not metastasize or healthy samples. "There are four different ways to encode for the protein building block arginine," explains the author. "Yet only one of those--the tRNA that recognizes the codon CGG--was associated with increased metastasis."

The tRNA that recognizes the codon GAA and encodes for a building block known as glutamic acid was also elevated in metastatic samples.

The team hypothesized that the elevated levels of these tRNAs may in fact drive metastasis. Working in mouse models of primary, non-metastatic tumors, the researchers increased the production of the tRNAs, and found that these cells became much more invasive and metastatic.

They also did the inverse experiment, with the anticipated results: reducing the levels of these tRNAs in metastatic cells decreased the incidence of metastases in the animals.

How do two tRNAs drive metastasis? The researchers teamed up proteomics facility to see how protein expression changes in cells with elevated levels of these two tRNAs.

"We found global increases in many dozens of genes," says Tavazoie, "so we analyzed their sequences and found that the majority of them had significantly increased numbers of these two specific codons."

According to the researchers, two genes stood out among the list. Known as EXOSC2 and GRIPAP1, these genes were strongly and directly induced by elevated levels of the specific glutamic acid tRNA.

"When we mutated the GAA codons to GAG-- a "silent" mutation because they both spell out the protein building block glutamic acid--we found that increasing the amount of tRNA no longer increased protein levels," explains the author. These proteins were found to drive breast cancer metastasis.

The work challenges previous assumptions about how tRNAs function and suggests that tRNAs can modulate gene expression, according to the researchers. Author points out that "it is remarkable that within a single cell type, synonymous changes in genetic sequence can dramatically affect the levels of specific proteins, their transcripts, and the way a cell behaves."

http://newswire.rockefeller.edu/2016/06/02/researchers-uncover-how-silent-genetic-changes-drive-cancer/