Lens-free fluorescent microscope

Lens-free fluorescent microscope

Lenses are no longer necessary for some microscopes, according to the engineers developing FlatScope, a thin fluorescent microscope whose abilities promise to surpass those of old-school devices.

A paper in Science Advances by Rice engineers describe a wide-field microscope thinner than a credit card, small enough to sit on a fingertip and capable of micrometer resolution over a volume of several cubic millimeters.

FlatScope eliminates the tradeoff that hinders traditional microscopes in which arrays of lenses can either gather less light from a large field of view or gather more light from a smaller field.

The Rice team began developing the device as part of a federal initiative by the Defense Advanced Research Projects Agency as an implantable, high-resolution neural interface. But the device's potential is much greater. The researchers claim FlatScope, an advance on the labs' earlier FlatCam, could be used as an implantable endoscope, a large-area imager or a flexible microscope.

Traditional fluorescent microscopes are essential tools in biology. They pick up fluorescent signals from particles inserted into cells and tissues that are illuminated with specific wavelengths of light. The technique allows scientists to probe and track biological agents with nanometer-scale resolution.

But like all traditional microscopes, telescopes and cameras, their resolution depends on the size of their lenses, which can be large and heavy and limit their use in biological applications.

The Rice team takes a different approach. It uses the same charge-coupled device (CCD) chips found in all electronic cameras to capture incoming light, but the comparisons stop there. Like the FlatCam project that inspired it, FlatScope's field of view equals the size of the CCD sensor, which can be as large or as small as required. It's flat because it replaces the array of lenses in a traditional microscope with a custom amplitude mask.

This mask, which resembles a bar code, sits directly in front of the CCD. Light that comes through the mask and hits the sensor becomes data that a computer program interprets to produce images.

The algorithm can focus on any part of the three-dimensional data the scope captures and produce images of objects smaller than a micron anywhere in the field.

That resolution is what makes the device a microscope, author said. "A camera in your mobile phone or DSLR typically gets on the order of 100-micron resolution," he said. "When you take a macro photo, the resolution is about 20 to 50 microns.

"I think of a microscope as something that allows you to image things on the micron scale," author said. "That means things that are smaller than the diameter of a human hair, like cells, parts of cells or the fine structure of fibers."

Achieving that resolution required modifications to the FlatCam mask to further cut the amount of light that reaches the sensor as well as a rewrite of their software, author said. "It wasn't as trivial as simply applying the FlatCam algorithm to the same techniques we used to image things that are far away," author said.

The mask is akin to the aperture in a lensed camera that focuses light onto the sensor, but it's only a few hundred micrometers from the sensor and allows only a fraction of the available light to get through, limiting the amount of data to simplify processing.

"In the case of a megapixel camera, that computational problem requires a matrix of a million times a million elements," author said. "It's an incredibly big matrix. But because we break it down through this pattern of rows and columns, our matrix is just 1 million elements."

That cuts the data for each snapshot from six terabytes to a more practical 21 megabytes, which translates to short processing times. From early versions of FlatCam that required an hour or more to process an image, FlatScope captures 30 frames of 3-D data per second.

Another author said the burgeoning internet of things may provide many applications for flat cameras and microscopes. That in turn would drive down costs. "One of the big advantages of this technology compared with traditional cameras is that because we don't need lenses, we don't need postfabrication assembly," author said. "We can imagine this rolling off a fabrication line."

But their primary targets are medical uses, from implantable scopes for the clinic to palm-sized microscopes for the battlefield. "To be able to carry a microscope in your pocket is a neat technology," author said.

The researchers noted that while their current work is focused on fluorescent applications, FlatScope could also be used for bright-field, dark-field and reflected-light microscopy. They suggested an array of FlatScopes on a flexible background could be used to match the contours of a target.